CV
Here you can access my 1-pager résumé.
Education
Work experience
- Aug 2018 - present: Graduate Student Researcher
- University of Pittsburgh, Pittsburgh, PA, USA
- Duties included: Research, lead the interventions modeling working group in the World Modelers project, lab git repo maintenance, peer review
- Research projects:
- Discrete modeling of Ras signaling pathways for optimizing cancer treatments
- Intervention modeling on causal graphs for resolving complex challenges, case study: Children malnutrition in Ethiopia
- Quantitative information extraction from unstructured text for automated executable network model building (NLU)
- Text mining of literature on transcranial magnetic stimulation (TMS) experiments for understanding the dynamics of human motor cortex circuitry
- Advisor: Dr. Natasa Miskov-Zivanov
- Feb 2018 - Aug 2018: Bioinformatics Engineer
- Persida, Belgrade, SERBIA
- Duties included: software development for mutation annotation, text mining and web interface development for our tool
- Supervisor: Aleksandar Mihajlovic
- Aug 2016 - Jun 2017: Bioinformatics Analyst
- Seven Bridges Genomics, Belgrade, SERBIA
- Duties included: bioinformatics tools wrapping, genomics analysis pipeline building and automation, cell free DNA (cfDNA) analyses
- Supervisor: Stefan Risteski, Sanja Mijalkovic
- Jun 2014 - Aug 2014: Summer Student
- CERN, Geneva, SWITZERLAND
- Duties included: development of a statistical method for estimation of theoretical uncertainties in top quark production processes (ATLAS experiment)
- Supervisor: Dr. Francesco Spano
- Jun 2013 - Aug 2013: Summer Research Intern
- Weizmann Institute, Rehovot, ISRAEL
- Duties included: data collection and curation in interactive WISeREP database, cross-analysis of spectroscopic and photometric observations of Supernovae type IIn
- Supervisor: Dr. Avishay Gal-Yam
Skills
- Programming languages: Python, C, C++
- Platforms: Linux, macOS, Windows
- Machine Learning and Deep Learning: Scikit-learn, PyTorch (preferred), Tensorflow, Keras
- NLP: NLTK, Spacy, Transformers (BERT)
- Genomics: GATK, SAMtools, BCFtools, Bedtools, BWA-MEM, somatic variant callers, IGV
- Structural biology: PyMOL, mdtraj, ProDy, VMD
Publications
Vidojevic, S., Ninkovic, S., Andjelkovic, S., Šarkovic, V., Zivanovic, F., Simonovic, B., & Badza, S. (2017). Participation of Serbia at the International Olympiads in Astronomy and Astrophysics in 2012 and 2013. Publ. Astron. Obs. Belgrade, 96, 529-532.
Andjelkovic, S., & Miskov-Zivanov, N. (2021). DiSH-trend: Intervention Modeling Simulator That Accounts for Trend Influences. arXiv preprint arXiv:2107.01302.
Talks
November 18, 2020
Talk at Oxford University Bioengineering Society, Oxford, UK
December 15, 2021
Conference proceedings talk at Winter Simulation Conferece 2021, Phoenix, AZ, USA
March 28, 2022
Outreach at TechNights, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA
Teaching
Service and leadership
- TechNights outreach program - guest talk and workshop
- CPCB GSA
- Student Seminar coordinator (2021/22)
- Treasurer (2020/21)
- Senator (2019/20)
- BGSA Student Representative (2018/19)
- CPCB Curriculum Committee Student Representative (2019-present)
- PEXIM Foundation - Alumnus, actively volunteering in PEXIM events, and serving in the PEXIM-Cambridge Scholarship selection process
- National Olympic Astronomical Committee of Serbia
- Serbian National Astronomy Olympic Team Leader at International Olympiad on Astronomy and Astrophysics in 2015 and 2016
